Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
adp_restraint_deltas_rmsFast computation of fixed_u_eq_adp::rms_deltas() given an array of the proxies
affine_asu_occupancy_parameter
affine_scalar_parameter
alignment_tChange-of-basis ("cb") matrix for joint alignment and its inverse
amplitude_normalisationAmplitudes normalisation transforming so-called F's into E's, and vice-versa
angleResidual and gradient calculations for angle restraint
angle_proxyGrouping of indices into array of sites (i_seqs) and angle_params
approx_equalElement-wise comparison with a given absolute tolerance
approx_equal_absolutelyA functor testing whether the relative error between two floating point values is smaller than some tolerance
approx_equal_absolutelyA functor testing whether the relative error between two floating point values is smaller than some tolerance
approx_equal_relativelyA functor testing whether the relative error between two floating point values is smaller than some tolerance
approx_equal_relativelyA functor testing whether the relative error between two floating point values is smaller than some tolerance
assignTo implement af::ref<T, AccessorType> = sparse::matrix or sparse::vector
asuAccess to general contiguous reciprocal space asymmetric units
asu_cacheAsymmetric unit cache to facilitate speed optimizations
asu_clustersDetermination of clusters of points with interactions defined by pair_asu_table
asu_mappingMapping of a site to an asymmetric unit
asu_mapping_indexGrouping of indices for site in asu_mappings container
asu_mapping_index_pairGrouping of indices for pair of sites in asu_mappings container
asu_mapping_index_pair_and_diffAsu_mapping_index_pair plus difference vector and distance squared
asu_mappingsContainer for mapping of sites to an asymmetric unit
asu_occupancy_parameterOccupancy of a scatterer
asu_parameterSite, isotropic or anisotropic displacement, etc., or combination of those
asu_site_parameterAsu scatterer site
asu_u_iso_parameterIsotropic thermal displacement parameter of a scatterer
asu_u_star_parameterAnisotropic displacement parameters of a site in the asu
asym_indexSelection of an asymmetric Miller index
atomAtom attributes
atom_dataHolder for atom attributes (to be held by a shared_ptr)
atom_groupAtom_group attributes
atom_group_dataHolder for atom_group attributes (to be held by a shared_ptr)
atom_label_columns_formatterNot available in Python
atom_maskRadial shell flat solvent mask and structure factors
auto_arrayLike std::auto_ptr, but with delete[]
axis_and_angle_from_matrixNumerically robust computation of rotation axis and angle
base
baseEvaluation or linearisation of $F_c(h)$ and of a derived observable, for any miller index h, as functions of crystallographic parameters
baseCoefficients for the Analytical Approximation to the Scattering Factor
basic_statisticsCollection of basic statistics such as min, max, mean, variance
batchSafe access to CMtz::MTZBAT* owned by an iotbx::mtz::object
bidiagonal_2x2_decompositionSpecial SVD for the 2x2 case
bidiagonal_decompositionGolub-Kahan decomposition of a bidiagonal matrix B
bidiagonalisationDecomposition U^T A V = B where B is bibidiagonal and U,V orthogonal
body_tAbstract body type
bondResidual and gradient calculations for harmonically restrained bonds
bond_asu_proxyGrouping of asu_mapping_index_pair and bond_params
bond_paramsGrouping of bond parameters distance_ideal and weight
bond_similarityResidual and gradient calculations for harmonically restrained bonds
bond_similarity_proxy
bond_simple_proxyGrouping of indices into array of sites (i_seqs) and bond_params
bond_sorted_asu_proxiesGeneration of sorted bond proxies
bond_sym_proxyGrouping of bond_simple_proxy and symmetry operation (rt_mx_ji)
brickParallelepiped that contains an asymmetric unit
brick_pointA "point" of a brick
build_normal_equationsBuild normal equations for the given data, model, weighting and constraints
cameraClass camera defines the experimental geometry
cartesianClass for cartesian (orthogonal, real) coordinates
cartesian_constraintsSpecial position constraints on Cartesian ADP's
chainChain attributes
chain_dataHolder for chain attributes (to be held by a shared_ptr)
change_of_basis_opChange-of-basis (transformation) operator
characteristicCharacteristic wavelengths of commonly used x-ray tube target materials
characteristic_iteratorIterator over characteristic wavelengths
chebyshev_baseChebyshev Base class
chebyshev_fitterA chebyshev polynome for coefficient fitting purposes
chebyshev_lsqSome functionality for least squares fitting
chebyshev_polynomeChebyshev polynome, witrh derivative with respect to x
chebyshev_smoothA chebyshev polynome with gibbs damping
chebyshev_smooth_fitterThe derivative of the chebyshev polynomial wrt to the coeficients
chebyshev_smooth_lsqSome functionality for least squares fitting
chiralityResidual and gradient calculations for chirality restraint
chirality_proxyGrouping of indices into array of sites (i_seqs) and parameters
columnSafe access to CMtz::MTZCOL* owned by an iotbx::mtz::dataset
columns_73_76_evaluatorDetects old-style PDB files with the PDB access code in columns 73-76
complex_groupResult type for family of object::extract_* functions
complex_to_complexComplex-to-complex Fast Fourier Transformation
complex_to_complex_2d2-dimensional complex-to-complex Fast Fourier Transformation
complex_to_complex_3d3-dimensional complex-to-complex Fast Fourier Transformation
computeAnalytical one-Gaussian a*exp(-b*x**2) approximation of y = f(x)
conformerConformer attributes
conformer_dataHolder for conformer attributes (to be held by a shared_ptr)
connectivityMap connectivity analysis
const_ref1Emulation of 1-dimensional FORTRAN arrays with offset 1
const_ref1Emulation of 1-dimensional FORTRAN arrays with offset 1
constraintsHandling of symmetry constraints for tensors of rank 2
continued_fractionContinued fraction as rational number
core
core_asuGeneric coordination sequence algorithm
core_symGeneric coordination sequence algorithm
cos_repulsion_functionEnergy(delta) = max_residual*((cos(pi*delta)+1)/2)**exponent
crystalSafe access to CMtz::MTZXTAL* owned by an iotbx::mtz::object
crystal_orientationClass for the handling of crystal orientation matrix
cutPlane in 3D for representation of faces of the asymmetric unit polyhedron
data_groupResult type for family of object::extract_* functions
datasetSafe access to CMtz::MTZSET* owned by an iotbx::mtz::crystal
demmel_kahan_rotations
dependent_occupancy
depth_first_search
detectorClass detector defines the image dimensions and pixel size
dfs_visitorA DFS visit following from each parameter to its arguments
dihedralResidual and gradient calculations for dihedral angle restraint
dihedral_proxyGrouping of indices into array of sites (i_seqs) and dihedral_params
direct_space_asuDirect space asymmetric unit
direction_base
dps_coreAutoindexing of observed reciprocal space vectors using DPS algorithm
drop_convergence_testConvergence test based on monitoring an objective function
dummy_extinction_correctionDummy extinction implementation
eigensystemGroup of associated eigenvectors and eigenvalues
ellipsoid_to_sphere_transform
end_of_lineEnd-of-line
erf_enginePort of http://www.netlib.org/specfun/erf (as of 2003 Dec 03)
errorAll gltbx exceptions are derived from this class
errorAll scitbx exceptions are derived from this class
errorAll smtbx exceptions are derived from this class
errorException carrying the parameter at fault
errorAll iotbx exceptions are derived from this class
errorAll mmtbx exceptions are derived from this class
errorAll scitbx exceptions are derived from this class
errorGeneric exception class for lbfgs error messages
errorAll cctbx exceptions are derived from this class
error_baseException which can plug into the SCITBX_ERROR_UTILS_ASSERT trickery
error_baseException which can plug into the SCITBX_ERROR_UTILS_ASSERT trickery
error_degenerate_unit_cell_parametersSpecific exception to indicate failure of reduction algorithm
error_improper_input_dataSpecific exception class
error_improper_input_parameterSpecific exception class
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_indexSpecial class for "Index out of range." exceptions
error_internal_errorSpecific exception class
error_iteration_limit_exceededSpecific exception to indicate failure of reduction algorithm
error_line_search_failedSpecific exception class
error_line_search_failed_rounding_errorsSpecific exception class
error_non_crystallographic_rotation_matrix_encounteredSpecific exception to indicate failure of group multiplication
error_rational_vectorSpecial class for rational vector exceptions
error_search_direction_not_descentSpecific exception class
expand_to_p1_complexExpands an array of Miller indices and associated complex data to P1 symmetry
expand_to_p1_hendrickson_lattmanExpands an array of Miller indices and associated Hendrickson-Lattman coefficients to P1 symmetry
expand_to_p1_iselectionExpands an array of Miller indices to P1 symmetry
expand_to_p1_phasesExpands an array of Miller indices and associated phases to P1 symmetry
expressionWrapper for expression template
expressionWrapper for expression template
extinction_correctionExtinction correction iterface
extinction_parameterExtinction correction parameter
f_calc_mapA mapping of miller indices to f_calc values with fast readonly access
f_calc_modulusThe modulus of complex structure factors
f_calc_modulus_squareThe modulus squared of complex structure factors
f_sq_as_f_xtal_3_7
factor_beta_u_isoFactorization into isotropic and remaining anisotropic contributions
factor_u_cart_u_isoFactorization into isotropic and remaining anisotropic contributions
factor_u_cif_u_isoFactorization into isotropic and remaining anisotropic contributions
factor_u_star_u_isoFactorization into isotropic and remaining anisotropic contributions
factorizationDetermination of prime factors for both complex-to-complex and real-to-complex transforms
failure_infoInfo about a failure during a Cholesky process
fast_bragg_simulationSimulation of nanocrystallography "still". Contributed by James Holton, LBNL
fast_less_thanDefinition of fast comparison for use in, e.g., std::map<miller::index<> >
fast_minimum_reductionFast minimum-lengths cell reduction
fast_nv1995Fast computation of the translation function (correlation of intensities)
fast_pair_generatorFast algorithm for generating pairs of next neighbors
fast_termsComputation of fast translation function terms
find_affineFind affine normalizers of triclinic and monoclinic space groups
flat_shared_conversions
flat_shared_to_structured_ref_conversionConversion of Python flex.T to e.g. const_ref< tiny<T,N> >
float_asuFloating-point parameterization of an asymmetric unit
float_cut_planeFloating-point parameterization of a cut plane
floating_point_epsilonDynamic determination of the smallest floating point number such that 1 + floating_point_epsilon() differs from 1
flood_fillSeparates a mask into individual voids
fp_fdpHelper class for passing f' (f-prime) and f" (f-double-prime)
fractionalClass for fractional coordinates
from_mapExtracts structure factors from a 3-dimensional complex map
functor_absoluteHelper function object for array operations
functor_absoluteHelper function object for array operations
functor_approx_equalHelper function object for array operations
functor_approx_equalHelper function object for array operations
functor_fmod_positiveHelper function object for array operations
functor_fmod_positiveHelper function object for array operations
functor_pow2Helper function object for array operations
functor_pow2Helper function object for array operations
gaussian_repulsion_functionEnergy(delta) = max_residual*exp(-delta**2/f_sq)
geometrical_hydrogen_sitesBase class for geometrical hydrogen
gilbert_peierls_lu_factorizationLU decomposition with partial pivoting
gill_murray_wright_decomposition_in_placeComputes PAP^{T} + E = LDL^{T}
golay_24_12_generatorGenerator for the 4096 binary words of the Golay (24,12) code
grid_pointClass for grid_point coordinates
grid_symopSymmetry operator optimized for grid
hendrickson_lattmanGrouping of Hendrickson-Lattman coefficients
hermitian_accessorThe accessor doing the magic behind the class f_calc_map
hexagonal_sampling_generatorGenerator for sampling based on a hexagonal close packing
histogramCompute map histogram and cumulative functions
histogramHistogram of an array of scalar values
hkl_columnsResult type for object::get_hkl_columns()
hr_ht_cacheThe miller indices $h R$ and the scalars $h t$ where $(R \mid t)$ spans the elements of a space group $G$
hr_ht_groupA pair $(hR, ht)$ where $(R \mid t)$ is a symmetry element
icosahedronCartesian coordinates of points on a sphere
image_dividerClass for breaking a detector image into component modules
imaginaryAn imaginary number
imaginary_unit_tThe complex number i
in_generic_space_group
in_origin_centric_space_group
incremental_d_star_sqHelper class for optimizing d_star_sq computations in loops over a grid of Miller indices
independent_scalar_parameterIndependent scalar parameter
independent_site_parameterScatterer site that is an independent parameter
indexMiller index class
index_generatorEfficient, easy-to-use algorithm for building an asymmetric unit of Miller indices up to a given high-resolution limit or up to a given maximum Miller index
index_rangeA range of index [fist, first+size)
index_spanDetermines min(indices[i]) and max(indices[i])+1, i=1..3, for an array of Miller indices
index_table_layout_adaptorSupport for common layouts of tables of asymmetric Miller indices
infoTranslates atom name alias to reference name
initialiserSyntactic sugar to initialise arrays
inputProcessing of PDB strings
input_atom_labelsEfficient processing of input atom labels
inverse_power_repulsion_functionEnergy(delta) = k_rep*vdw_distance/(delta**irexp) repulsive function
is_singular_revoluteHelper
isotropic_form_factor_mixinHelper
it1992Coefficients for the Analytical Approximation to the Scattering Factor
it1992_iteratorIterator over table of Coefficients for the Analytical Approximation to the Scattering Factor, International Tables 1992
joint_tAbstract joint model
l_l_transpose_decomposition_in_placeCholesky decomposition A = L L^T in place
least_squares_plane
least_squares_residualA functor representing a least-squares residual
levenberg_marquardtC++ wrapper for MINPACK lmder
line_infoFacilitates fast processing and comprehensive error messages
linear_lsNormal equations for linear least-squares problem
linearised_eqns_of_restraintThe linearised equations of restraints
lmderC++ port of lmder
local_scaling_nikonov
lq_decompositionHouseholder LQ decomposition
ls_with_scale_and_biasL.S. misfit on F^2 between observed and shifted symmetrised s.f
machine_dependent_basePort of http://www.netlib.org/specfun/erf (as of 2003 Dec 03)
map_readerReads density maps stored in xplor format
mappingPair of wyckoff::position and a symmetry operation
mass_points_cacheHelper
mat2Matrix class (2x2)
mat3Matrix class (3x3)
matrixA sparse matrix, represented by a sequence of sparse columns
matrix_distributionRandom sparse matrix distribution
matrix_operating_on_dense_matrixSparse matrix operating on a dense matrix
maximum_likelihood_criterionMaximum-likelihood target function and gradients
maximum_likelihood_criterion_hlMaximum-likelihood target function and gradients
mean_square_displacementMean square displacement along a direction
median_functorFunctor returning a given quantile of a list of data
median_statisticsMedian and dispersion around it
mem_iteration
merge_equivalents_shelx
mersenne_twisterWrapper for boost/random/mersenne_twister.hpp
min_sym_equiv_distance_infoAlgorithm for finding the shortest distance between two sites under application of space group symmetry
minimizerInterface to the LBFGS minimizer
minimizerHigh-level interface to L-BFGS-B Version 2.1
minimum_covering_sphere_3dMinimum covering sphere of a set of 3-dimensional points
minus_equalTo implement af::ref<T, AccessorType> -= sparse::matrix or sparse::vector
modelTorsion-angle refinement and dynamics model
modelModel attributes
model_dataHolder for model attributes (to be held by a shared_ptr)
more_statisticsDetermines higher order statistical central moments
neutron_news_1992_tableAccess to neutron bound scattering lengths & cross-sections
neutron_news_1992_table_iteratorIterator over neutron_news_1992_table entries
nodeGrouping of symmetry operations characterizing a node in a graph of bonded sites
non_linear_lsNormal equations for non-linear least-squares
non_linear_ls_with_separable_scale_factorNormal equations for least-squares fit with an overall scale
non_parametric_bootstrapResampling class
non_parametric_bootstrap_as_intResampling class
nonbondedResidual and gradient calculations for nonbonded restraints
nonbonded_asu_proxyGrouping of asu_mapping_index_pair and vdw_distance
nonbonded_paramsGrouping of parameters for the generation of nonbonded pair interactions
nonbonded_simple_proxyGrouping of indices into array of sites (i_seqs) and vdw_distance
nonbonded_sorted_asu_proxiesGeneration of sorted nonbonded proxies
norm_accumulatorLAPACK-style norm of a vector: overflow- and underflow-resilient
normal_direction
numeric_limitsExtension of std::numeric_limits for LAPACK-style floating point info
objectWrapper for CMtz::MTZ*
observations_groupResult type for family of object::extract_* functions
ordered_scatterer_parametersHelper to present crystallographic parameters in a user-defined order
origin_fixingRestraints to prevent the structure to freely move as a whole along the continuous shift directions if any
packed_l_accessorAccessor for the lower diagonal of a square matrix packed by row
packed_u_accessorAccessor for the upper diagonal of a square matrix packed by row
pair_asu_tableManaged table of pair interactions based on direct_space_asu::asu_mappings
pairwise_globalBased on implementation by Kevin Cowtan
parameterA parameter which may be vector-valued
parameter_indicesPosition of the various derivatives or shifts in an array
parameter_mapAn array of parameter_indices
parse_stringClass for communicating string parsing errors
partial_spot_position_partial_HClass to assist calculation of fractional Miller index positions
peng1996Coefficients for the Electron Scattering Factor
peng1996_iteratorIterator over table of Coefficients for the Analytical Approximation to the Scattering Factor, Waasmaier & Kirfel 1995
permutedPermuted sparse vector expression
phase_infoHandling of phase restrictions and optional evaluation of conditions for systematically absent reflections
phase_integrator
pivoted_rotatable_group
planarityResidual and gradient calculations for planarity restraint
planarity_proxyGrouping of indices into array of sites (i_seqs) and weights
plus_equalTo implement af::ref<T, AccessorType> += sparse::matrix or sparse::vector
polyhedral_bh_siteModel of polyhedral B/C(4,5)-H
positionInformation for Wyckoff positions
principal_axes_of_inertia
principal_axes_of_inertia_2d
productProduct of Given rotations $G_1, G_2, ... ,G_n$
projection_sum
prolsq_repulsion_functionGeneral repulsive function (see PROLSQ and CNS)
proto_cylinderA prototype of a cylinder stored in a diplay list
proto_ellipsoidA prototype of an ellispoid stored in a display list
py_hashableA class to inherit from to provide Python hashing in a wrapper
qr_decompositionHouseholder QR decomposition
random_gauss_adaptorHelper
random_normal_matrix_generator
range_loopHelper for looping over index ranges
realAnalytical solution of ax**3 + bx**2 + cx + d = 0
real_symmetricGroup of associated eigenvectors and eigenvalues
real_to_complexReal-to-complex Fast Fourier Transformation
real_to_complex_3d3-dimensional real-to-complex Fast Fourier Transformation
ref1Emulation of 1-dimensional FORTRAN arrays with offset 1
ref2Emulation of 2-dimensional FORTRAN arrays with offset 1
ref_owning_sharedLike af::ref but it owns the shared array it refers to
ref_owning_versaLike af::ref but it owns the versa array it refers to
reference_asuContiguous reciprocal space asymmetric units for the 230 reference settings
reflectionHouseholder reflection P = I - beta v v^T
reflection_rangeClass determines the Bragg spot reflecting range under rotation photography
relative_hirshfeld_differenceRelative difference of the mean square displacements of two scatterers
remainder_and_quotientQuotient and remainder of x/y for floating point x and y
reparametrisationCrystal structure reparametrisation
residueResidue attributes
residue_dataHolder for residue attributes (to be held by a shared_ptr)
residue_groupResidue_group attributes
residue_group_dataHolder for residue_group attributes (to be held by a shared_ptr)
revoluteRevolute (one degree of freedom) body model (see Featherstone RBDA 2007)
revoluteRevolute (one degree of freedom) joint model (see Featherstone RBDA 2007)
revolute_alignmentSee code
riding_expandable_group
rigid_group_base
rootRoot attributes
root_dataHolder for root attributes (to be held by a shared_ptr)
rot_mx3x3 rotation matrix
rot_mx_infoClass for grouping information about rotation matrices
rotatable_expandable_group
rotationGivens rotation
rotation_anglesClass for determining if a Miller index diffracts
rt_mxRotation-Translation matrix
rt_mx_from_stringParser for xyz expressions
same_group_xyz
scalar_parameterScalar parameter
scattererInformation about an atom that is needed for a structure factor calculation
scatterer_parametersThe constraints::parameters corresponding to a single scatterer
search_symmetryParameterization of search symmetries
search_symmetry_flagsGrouping of flags determining the symmetry of search spaces
secondary_planar_xh_siteModel of aromatic C-H or amide N-H
secondary_xh2_sitesModel of X-CH2-Y
shared_rotated_u_star
shared_site
shared_u_iso
shared_u_star
shell_asu_tables_actionsActions for the generation of higher-level (nonbonded) interactions
shell_sym_tables_actionsActions for the generation of higher-level (nonbonded) interactions
simple_pair_generatorSimple O(N^2) algorithm for generating pairs of next neighbors
single_asu_scatterer_parameterParameter of a single scatterer in the asu
site_constraintsHandling of site symmetry coordinate constraints
site_parameterScatterer site
site_symmetryNumerically robust algorithm for the determination of site-symmetries
site_symmetry_opsBase class for site_symmetry, holding the essential results
six_dofSix degree-of-freedom body model (see Featherstone RBDA 2007)
six_dofSix degree-of-freedom joint model (see Featherstone RBDA 2007)
six_dof_alignmentSee code
smooth_bootstrapResampling class
solve_in_placeUmbrella for A x = b solvers in place
sorted_asu_proxiesManaged group of simple proxies and asu proxies
space_groupSpace group operations
space_group_symbol_iteratorIterator for the 530 tabulated space group representations
space_group_symbolsClass for the handling of space group symbols of various types
space_group_typeComputation and use of change-of-basis matrix to reference setting
special_position_site_parameterSite constrained to be on a special position
special_position_u_star_parameterAnisotropic displacement constrained by the symmetry of a special position
sphericalSpherical (three degrees of freedom) joint model (see Featherstone RBDA 2007)
sphericalSpherical (three degrees of freedom) body model (see Featherstone RBDA 2007)
spherical_alignmentSee code
ss_vec_modEntry in list of structure seminvariant vectors and moduli
static_direction
statisticsDetermines simple map statistics
streambufA stream buffer getting data from and putting data into a Python file object
structure_seminvariantsStructure-seminvariant vector and moduli
structured_to_flat_shared_conversionConversion of e.g. shared< tiny<T,N> > to shared<T>
sumSum of Gaussian terms plus a constant
sym_equiv_indexClass for symmetrically equivalent Miller indices
sym_equiv_indicesClass for the handling of symmetrically equivalent Miller indices
sym_equiv_sitesContainer for symmetrically equivalent coordinates
sym_mat2Symmetric 2x2 matrix class
sym_mat3Symmetric 3x3 matrix class
symmetrised_shifted_structure_factors
symmetryGrouping of unit cell and space group
symmetry_equivalent_site_parameterA symmetry equivalent site of a site in the asu
symmetry_flagsGrouping of flags determining the symmetry of the translation function
system_modelRBDA Tab. 4.3, p. 87
tableAccess to table of ionic radii
tableTiny Periodic System of Elements
tableTable of Wyckoff positions
table
tableAccess to table of covalent radii
tableAccess to Henke tables
tableAccess to Sasaki tables
table_data
table_entryEntry in table of N-Gaussian approximations
table_iteratorIterator over Henke tables
table_iteratorIterator over table entries
table_iteratorIterator over table of radii
table_iteratorIterator over Sasaki tables
table_iteratorIterator over table of radii
termGaussian term: a Exp[-b x^2]
term_table_actions_asuActions for simple counting
term_table_actions_symActions for simple counting
terminal_linear_ch_siteModel of acetylenic X-CH
terminal_planar_xh2_sitesModel of terminal Z-Y=XH2 (ethylenic CH2 or amide NH2)
terminal_tetrahedral_xhn_sitesModel of Y-XHn with tetrahedral angles
tertiary_xh_siteModel of tertiary CH
three_shellsBuffer for nodes in three shells
to_mapCopies a structure factor array to a 3-dimensional complex map
tr_vecTranslation vector
tr_vec_12Constructor for initialization of constants
traditional_convergence_testTraditional LBFGS convergence test
translation_part_infoAnalysis of the translation part of a rotation-translation matrix
translationalTranslational (three degrees of freedom) joint model (see Featherstone RBDA 2007)
translationalTranslational (three degrees of freedom) body model (see Featherstone RBDA 2007)
translational_alignmentSee code
triangulationTriangulation of an isosurface of a scalar field
triplet_generatorTriplets for direct methods (reciprocal-space squaring)
triplet_phase_relationTriplet phase relation h = k + h-k
twin_fraction_parameterTwin component parameter
u_iso_proportional_to_pivot_u_eq
u_iso_proportional_to_pivot_u_iso
u_star_parameterAnisotropic displacement parameters of a site
u_transpose_u_decomposition_in_placeCholesky decomposition A = U^T U in place
unit_cellClass for the handling of unit cell information
upper_diagonalUpper diagonal selection
upper_diagonalA proxy for the upper diagonal of a sparse matrix
variate_generator
variate_generator_wrappersBoost.Python wrapper for variate_generator<Engine, Distribution>
vec2Two-dimensional vector
vec3Three-dimensional vector
vector
vector::element_const_referenceA const reference to an element of given index
vector::element_referenceA reference to an element of given index
vector_direction
vector_distributionRandom sparse vector distribution
weighted_covarianceVariance-Covariance of a 2-dimensional distribution (x,y)
weighted_triplet_phase_relationWeighted triplet phase relation
wholeWhole matrix selection
wk1995Coefficients for the Analytical Approximation to the Scattering Factor
wk1995_iteratorIterator over table of Coefficients for the Analytical Approximation to the Scattering Factor, Waasmaier & Kirfel 1995
wrap_distribution_and_variateBoost.Python wrapper for
xfel1XFEL Simulation #1
zero_dofZero degree-of-freedom joint model
zero_dofZero degree-of-freedom body model
zero_dof_alignmentSee code

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