iotbx::pdb Namespace Reference

Handling of files in PDB format. More...

Classes
struct	range_loop
	Helper for looping over index ranges. More...
class	line_info
	Facilitates fast processing and comprehensive error messages. More...
struct	columns_73_76_evaluator
	Detects old-style PDB files with the PDB access code in columns 73-76. More...
class	input
	Processing of PDB strings. More...
struct	input_atoms_with_labels_generator
struct	input_atoms_with_labels_af_shared
struct	stream_write
struct	small_str
struct	xray_structures_simple_extension
Namespaces
namespace	hierarchy
	Hierarchy organizing PDB atom objects.
namespace	hybrid_36
	Hybrid-36 C++ wrappers.
namespace	rna_dna_atom_names
	Highly optimized dictionary of RNA/DNA atom name aliases.
namespace	utils
	Miscellaneous algorithms.
Typedefs
typedef scitbx::vec3< double >	vec3
typedef scitbx::sym_mat3< double >	sym_mat3
typedef small_str< 1 >	str1
typedef small_str< 2 >	str2
typedef small_str< 3 >	str3
typedef small_str< 4 >	str4
typedef small_str< 5 >	str5
typedef small_str< 6 >	str6
typedef small_str< 7 >	str7
typedef small_str< 8 >	str8
Enumerations
enum	small_str_no_init_t { small_str_no_init }
Functions
void	input_as_pdb_string (input const &self, stream_write &write, bool append_end, bool atom_hetatm, bool sigatm, bool anisou, bool siguij)
unsigned	stripped_size (const char *s)
unsigned	rstripped_size (const char *s)
void	copy_left_justified (char *dest, unsigned dest_size, const char *src, unsigned src_size, char pad_with)
void	copy_right_justified (char *dest, unsigned dest_size, const char *src, unsigned src_size, char pad_with)

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Detailed Description

Handling of files in PDB format.