iotbx::pdb Namespace Reference

Handling of files in PDB format. More...


Classes

struct  range_loop
 Helper for looping over index ranges. More...
class  line_info
 Facilitates fast processing and comprehensive error messages. More...
struct  columns_73_76_evaluator
 Detects old-style PDB files with the PDB access code in columns 73-76. More...
class  input
 Processing of PDB strings. More...
struct  input_atoms_with_labels_generator
struct  input_atoms_with_labels_af_shared
struct  stream_write
struct  small_str
struct  xray_structures_simple_extension

Namespaces

namespace  hierarchy
 Hierarchy organizing PDB atom objects.
namespace  hybrid_36
 Hybrid-36 C++ wrappers.
namespace  rna_dna_atom_names
 Highly optimized dictionary of RNA/DNA atom name aliases.
namespace  utils
 Miscellaneous algorithms.

Typedefs

typedef scitbx::vec3< double > vec3
typedef scitbx::sym_mat3< double > sym_mat3
typedef small_str< 1 > str1
typedef small_str< 2 > str2
typedef small_str< 3 > str3
typedef small_str< 4 > str4
typedef small_str< 5 > str5
typedef small_str< 6 > str6
typedef small_str< 7 > str7
typedef small_str< 8 > str8

Enumerations

enum  small_str_no_init_t { small_str_no_init }

Functions

void input_as_pdb_string (input const &self, stream_write &write, bool append_end, bool atom_hetatm, bool sigatm, bool anisou, bool siguij)
unsigned stripped_size (const char *s)
unsigned rstripped_size (const char *s)
void copy_left_justified (char *dest, unsigned dest_size, const char *src, unsigned src_size, char pad_with)
void copy_right_justified (char *dest, unsigned dest_size, const char *src, unsigned src_size, char pad_with)


Detailed Description

Handling of files in PDB format.

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