Package Contents
		energies flags tst_ext

Classes
		__builtin__.object adp_aniso_restraints scitbx.restraints.energies(__builtin__.object) energies_iso   class adp_aniso_restraints(__builtin__.object)       Methods defined here: __init__(self, xray_structure, restraints_manager, selection=None) check_flags(self, fl) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class energies_iso(scitbx.restraints.energies)       Method resolution order: energies_iso scitbx.restraints.energies __builtin__.object Methods defined here: __init__(self, geometry_restraints_manager, xray_structure, parameters, use_u_local_only, use_hd, wilson_b=None, compute_gradients=True, gradients=None, normalization=False, collect=False) Methods inherited from scitbx.restraints.energies: __iadd__(O, rhs) finalize_target_and_gradients(O) Data descriptors inherited from scitbx.restraints.energies: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Functions
		adp_similarity_deltas_rms(...) adp_similarity_deltas_rms( (sym_mat3_double)u_cart, (object)u_iso, (bool)use_u_aniso, (shared_adp_similarity_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> adp_similarity_deltas_rms(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<double, scitbx::af::trivial_accessor>,scitbx::af::const_ref<bool, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::adp_similarity_proxy, scitbx::af::trivial_accessor>) adp_similarity_residual_sum(...) adp_similarity_residual_sum( (sym_mat3_double)u_cart, (object)u_iso, (bool)use_u_aniso, (shared_adp_similarity_proxy)proxies, (sym_mat3_double)gradients_aniso_cart, (object)gradients_iso) -> float :       C++ signature :         double adp_similarity_residual_sum(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<double, scitbx::af::trivial_accessor>,scitbx::af::const_ref<bool, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::adp_similarity_proxy, scitbx::af::trivial_accessor>,scitbx::af::ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::ref<double, scitbx::af::trivial_accessor>) adp_similarity_residuals(...) adp_similarity_residuals( (sym_mat3_double)u_cart, (object)u_iso, (bool)use_u_aniso, (shared_adp_similarity_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> adp_similarity_residuals(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<double, scitbx::af::trivial_accessor>,scitbx::af::const_ref<bool, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::adp_similarity_proxy, scitbx::af::trivial_accessor>) isotropic_adp_deltas_rms(...) isotropic_adp_deltas_rms( (sym_mat3_double)u_cart, (shared_isotropic_adp_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> isotropic_adp_deltas_rms(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::isotropic_adp_proxy, scitbx::af::trivial_accessor>) isotropic_adp_residual_sum(...) isotropic_adp_residual_sum( (sym_mat3_double)u_cart, (shared_isotropic_adp_proxy)proxies, (sym_mat3_double)gradients_aniso_cart) -> float :       C++ signature :         double isotropic_adp_residual_sum(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::isotropic_adp_proxy, scitbx::af::trivial_accessor>,scitbx::af::ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>) isotropic_adp_residuals(...) isotropic_adp_residuals( (sym_mat3_double)u_cart, (shared_isotropic_adp_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> isotropic_adp_residuals(scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::isotropic_adp_proxy, scitbx::af::trivial_accessor>) rigid_bond_deltas(...) rigid_bond_deltas( (vec3_double)sites_cart, (sym_mat3_double)u_cart, (shared_rigid_bond_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> rigid_bond_deltas(scitbx::af::const_ref<scitbx::vec3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::rigid_bond_proxy, scitbx::af::trivial_accessor>) rigid_bond_residual_sum(...) rigid_bond_residual_sum( (vec3_double)sites_cart, (sym_mat3_double)u_cart, (shared_rigid_bond_proxy)proxies, (sym_mat3_double)gradients_aniso_cart) -> float :       C++ signature :         double rigid_bond_residual_sum(scitbx::af::const_ref<scitbx::vec3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::rigid_bond_proxy, scitbx::af::trivial_accessor>,scitbx::af::ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>) rigid_bond_residuals(...) rigid_bond_residuals( (vec3_double)sites_cart, (sym_mat3_double)u_cart, (shared_rigid_bond_proxy)proxies) -> double :       C++ signature :         scitbx::af::shared<double> rigid_bond_residuals(scitbx::af::const_ref<scitbx::vec3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<scitbx::sym_mat3<double>, scitbx::af::trivial_accessor>,scitbx::af::const_ref<cctbx::adp_restraints::rigid_bond_proxy, scitbx::af::trivial_accessor>)

Data
		__warningregistry__ = {("Not importing directory '/net/chevy/raid1/rwgk/dist/cctbx_project/cctbx/adptbx': missing __init__.py", <type 'exceptions.ImportWarning'>, 8): True}