cctbx.neutron
index
/net/chevy/raid1/nat/src/cctbx_project/cctbx/neutron/__init__.py

 
Package Contents
       

 
Classes
       
__builtin__.object
scatterer
cctbx.crystal.special_position_settings(cctbx.crystal.symmetry)
structure

 
class scatterer(__builtin__.object)
     Methods defined here:
__init__(self, label='', site=(0, 0, 0), u=None, occupancy=1, scattering_info='', b=None)
apply_symmetry(self, unit_cell, space_group, min_distance_sym_equiv=0.5, u_star_tolerance=0, assert_min_distance_sym_equiv=True)
multiplicity(self)
update_weight(self, space_group_order_z)
weight(self)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class structure(cctbx.crystal.special_position_settings)
    
Method resolution order:
structure
cctbx.crystal.special_position_settings
cctbx.crystal.symmetry
__builtin__.object

Methods defined here:
__init__(self, special_position_settings, scatterers=None)
add_scatterer(self, scatterer)
add_scatterers(self, scatterers)
apply_symmetry(self, i)
scatterers(self)
show_scatterers(self, f=None)
show_summary(self, f=None)
special_position_indices(self)
structure_factors(self, d_min)

Methods inherited from cctbx.crystal.special_position_settings:
assert_min_distance_sym_equiv(self)
asu_mappings(self, buffer_thickness, sites_frac=None, sites_cart=None, site_symmetry_table=None, asu_is_inside_epsilon=None)
change_basis(self, cb_op)
incremental_pairs(self, distance_cutoff, asu_is_inside_epsilon=None, asu_mappings_buffer_thickness=-1, cubicle_epsilon=-1)
min_distance_sym_equiv(self)
pair_asu_table(self, distance_cutoff, sites_frac=None, sites_cart=None, site_symmetry_table=None, asu_mappings_buffer_thickness=None, asu_is_inside_epsilon=None, min_cubicle_edge=5, distance_cutoff_epsilon=None)
pair_generator(self, distance_cutoff, sites_frac=None, sites_cart=None, site_symmetry_table=None, asu_mappings_buffer_thickness=None, asu_is_inside_epsilon=None, minimal=False)
site_cluster_analysis(self, min_distance=None, min_cross_distance=None, min_self_distance=None, general_positions_only=False, estimated_reduction_factor=4, asu_is_inside_epsilon=None, asu_mappings_buffer_thickness=-1, min_cubicle_edge=5, cubicle_epsilon=-1)
site_symmetry(self, site=None, site_cart=None)
site_symmetry_table(self, sites_frac=None, sites_cart=None, unconditional_general_position_flags=None)
sym_equiv_sites(self, site)
u_star_tolerance(self)
xray_structure(self, scatterers=None)

Methods inherited from cctbx.crystal.symmetry:
as_cif_block(self)
as_py_code(self, indent='')
as_reference_setting(self)
average_b_cart(self, b_cart)
average_u_cart(self, u_cart)
best_cell(self, angular_tolerance=None)
build_miller_set(self, anomalous_flag, d_min, d_max=None)
cell_equivalent_p1(self)
change_of_basis_op_to_best_cell(self, angular_tolerance=None, best_monoclinic_beta=True)
change_of_basis_op_to_inverse_hand(self)
change_of_basis_op_to_minimum_cell(self)
change_of_basis_op_to_niggli_cell(self, relative_epsilon=None, iteration_limit=None)
change_of_basis_op_to_primitive_setting(self)
change_of_basis_op_to_reference_setting(self)
customized_copy(self, unit_cell=<class libtbx.utils.Keep>, space_group_info=<class libtbx.utils.Keep>, raise_sorry_if_incompatible_unit_cell=False)
direct_space_asu(self)
gridding(self, d_min=None, resolution_factor=None, step=None, symmetry_flags=None, mandatory_factors=None, max_prime=5, assert_shannon_sampling=True)
inverse_hand(self)
is_compatible_unit_cell(self)
is_patterson_symmetry(self)
is_similar_symmetry(self, other, relative_length_tolerance=0.01, absolute_angle_tolerance=1.0)
join_symmetry(self, other_symmetry, force=False, raise_sorry_if_incompatible_unit_cell=False)
miller_set(self, indices, anomalous_flag)
minimum_cell(self)
niggli_cell(self, relative_epsilon=None, iteration_limit=None)
patterson_symmetry(self)
primitive_setting(self)
reflection_intensity_symmetry(self, anomalous_flag)
space_group(self)
space_group_info(self)
special_position_settings(self, min_distance_sym_equiv=0.5, u_star_tolerance=0, assert_min_distance_sym_equiv=True)
subtract_continuous_allowed_origin_shifts(self, translation_cart)
unit_cell(self)

Data descriptors inherited from cctbx.crystal.symmetry:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)