iotbx.mtz
index
/net/chevy/raid1/rwgk/dist/iotbx/mtz/__init__.py

 
Package Contents
       
crystal_symmetry_from_mtz
extract_from_symop_lib
tst
tst_ext

 
Classes
       
__builtin__.object
label_decorator

 
class label_decorator(__builtin__.object)
     Methods defined here:
__init__(self, anomalous_plus_suffix='(+)', anomalous_minus_suffix='(-)', sigmas_prefix='SIG', sigmas_suffix='', phases_prefix='PHI', phases_suffix='', hendrickson_lattman_suffix_list=['A', 'B', 'C', 'D'])
anomalous(self, root_label, sign=None)
hendrickson_lattman(self, root_label, i_coeff, anomalous_sign=None)
phases(self, root_label, anomalous_sign=None)
sigmas(self, root_label, anomalous_sign=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
are_anomalous_labels(sign, labels)
ccp4_liberr_verbosity(...)
ccp4_liberr_verbosity( (int)level) -> int :
 
    C++ signature :
        int ccp4_liberr_verbosity(int)
cmtz_struct_sizes(...)
cmtz_struct_sizes() -> size_t :
 
    C++ signature :
        scitbx::af::shared<unsigned long> cmtz_struct_sizes()
column_group(crystal_symmetry_from_file, crystal_symmetry, base_array_info, primary_column_type, labels, group, observation_type)
default_column_types(miller_array)
format_min_max(func, values)
is_anomalous_label(sign, label)
mend_non_conforming_anomalous_column_types(all_types, all_labels)
miller_array_as_mtz_dataset(self, column_root_label, column_types=None, label_decorator=None, title=None, crystal_name='crystal', project_name='project', dataset_name='dataset', wavelength=1.0)
tidy_show_column_data_format_keyword(input)

 
Data
        anomalous_label_patterns = {'+': ('+', 'PLUS'), '-': ('-', 'MINU')}
column_type_legend = {'A': 'phase probability coefficients (Hendrickson/Lattman)', 'B': 'BATCH number', 'D': 'anomalous difference', 'F': 'amplitude', 'G': 'F(+) or F(-)', 'H': 'index h,k,l', 'I': 'integer', 'J': 'intensity', 'K': 'I(+) or I(-)', 'L': 'standard deviation', ...}
column_type_legend_source = 'http://www.ccp4.ac.uk/dist/html/mtzlib.html#fileformat'
expected_cmtz_struct_sizes = ((56, 84, 176, 500, 12336, 12488), (64, 88, 184, 504, 12336, 12528))
generators = _Feature((2, 2, 0, 'alpha', 1), (2, 3, 0, 'final', 0), 0)
show_column_data_format_keywords = ['human_readable', 'machine_readable', 'spreadsheet']