iotbx.phil
index
/net/chevy/raid1/nat/src/cctbx_project/iotbx/phil.py

 
Modules
       
libtbx
os
cctbx.sgtbx
sys
libtbx.phil.tokenizer
cctbx.uctbx

 
Classes
       
__builtin__.object
process_command_line_with_files
setup_app_generic
space_group_converters
unit_cell_converters
libtbx.phil.qstr_converters(__builtin__.object)
atom_selection_converters

 
class atom_selection_converters(libtbx.phil.qstr_converters)
    
Method resolution order:
atom_selection_converters
libtbx.phil.qstr_converters
__builtin__.object

Methods defined here:
__str__(self)
from_words(self, words, master)

Data and other attributes defined here:
phil_type = 'atom_selection'

Methods inherited from libtbx.phil.qstr_converters:
as_words(self, python_object, master)

Data descriptors inherited from libtbx.phil.qstr_converters:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class process_command_line_with_files(__builtin__.object)
     Methods defined here:
__call__(self, arg)
__init__(self, args, master_phil=None, master_phil_string=None, pdb_file_def=None, reflection_file_def=None, map_file_def=None, cif_file_def=None, seq_file_def=None, pickle_file_def=None, directory_def=None, integer_def=None, float_def=None, space_group_def=None, unit_cell_def=None, usage_string=None)
get_cached_file(self, file_name)
get_file(self, file_name, force_type=None)
get_file_type_count(self, file_type)
process_other(self, arg)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class setup_app_generic(__builtin__.object)
    # Utilities for Phenix GUI
 
  Methods defined here:
__call__(self, args)
__init__(self, master_phil_path)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class space_group_converters(__builtin__.object)
     Methods defined here:
__str__(self)
as_words(self, python_object, master)
from_words(self, words, master)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Data and other attributes defined here:
phil_type = 'space_group'

 
class unit_cell_converters(__builtin__.object)
     Methods defined here:
__str__(self)
as_words(self, python_object, master)
from_words(self, words, master)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Data and other attributes defined here:
phil_type = 'unit_cell'

 
Functions
       
load_from_cache_if_possible(phil_path)
parse(input_string=None, source_info=None, file_name=None, converter_registry=None, process_includes=False)
parse_command_line_phil_args(args, master_phil, command_name, usage_opts, app_options, home_scope, log=<open file '<stdout>', mode 'w'>)
# TODO probably redundant, replace with process_command_line or similar?
process_command_line(args, master_string, parse=None)
read_default(caller_file_name, params_extension='.params', converter_registry=None, process_includes=True)

 
Data
        Auto = <libtbx.AutoType object>
default_converter_registry = {'atom_selection': <class 'iotbx.phil.atom_selection_converters'>, 'bool': <class 'libtbx.phil.bool_converters'>, 'choice': <class 'libtbx.phil.choice_converters'>, 'float': <class 'libtbx.phil.float_converters'>, 'floats': <class 'libtbx.phil.floats_converters'>, 'int': <class 'libtbx.phil.int_converters'>, 'ints': <class 'libtbx.phil.ints_converters'>, 'key': <class 'libtbx.phil.key_converters'>, 'path': <class 'libtbx.phil.path_converters'>, 'qstr': <class 'libtbx.phil.qstr_converters'>, ...}
division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)