libtbx
index
/net/chevy/raid1/nat/src/cctbx_project/libtbx/__init__.py

 
Package Contents
       
assert_utils
auto_build (package)
binary_search
bundle (package)
callbacks
clear_paths
cluster
clusterTests
code_analysis
command_line (package)
complex_math
configure
console_utils
containers
cpp_function_name
crossmingw
development (package)
dlite
easy_mp
easy_pickle
easy_profile
easy_run
env_config
find_reference_cycles
forward_compatibility
introspection
load_env
log
lzw
math_utils
metric_prefixes
object_oriented_patterns
objgraph
option_parser
path
pexpect
phil (package)
program_utils (package)
pyframe
pyplot
python_code_parsing
queuing_system_utils (package)
run_tests
runtime_utils
server (package)
simplexml
smart_open
start_print_trace
str_utils
subprocess_with_fixes
subversion
table_utils
test_utils (package)
thread_utils
topological_sort
try_hello_world_c
tst_binary_search
tst_containers
tst_dlite
tst_easy_mp
tst_easy_pickle
tst_lzw
tst_math_utils
tst_object_oriented_patterns
tst_path
tst_python_code_parsing
tst_representation
tst_runtime_utils
tst_str_utils
tst_thread_utils
tst_topological_sort
tst_utils
tst_xmlrpc_utils
utils
wingide
xmlrpc_server_example
xmlrpc_utils

 
Classes
       
__builtin__.dict(__builtin__.object)
dict_with_default_0
__builtin__.object
AutoType
copy_init_args
group_args
property
slots_getstate_setstate
mutable
slots_getstate_setstate_default_initializer
unpicklable

 
class AutoType(__builtin__.object)
    Class for creating the Auto instance, which mimics the behavior of None
with respect to the 'is' and '==' operators; this is used throughout
CCTBX to indicate parameters that should be determined automatically.
 
  Methods defined here:
__eq__(self, other)
__str__(self)

Static methods defined here:
__new__(cls)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Data and other attributes defined here:
singleton = <libtbx.AutoType object>

 
class copy_init_args(__builtin__.object)
     Methods defined here:
__init__(self, args, exclude=())

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class dict_with_default_0(__builtin__.dict)
    
Method resolution order:
dict_with_default_0
__builtin__.dict
__builtin__.object

Methods defined here:
__missing__(self, key)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Methods inherited from __builtin__.dict:
__cmp__(...)
x.__cmp__(y) <==> cmp(x,y)
__contains__(...)
D.__contains__(k) -> True if D has a key k, else False
__delitem__(...)
x.__delitem__(y) <==> del x[y]
__eq__(...)
x.__eq__(y) <==> x==y
__ge__(...)
x.__ge__(y) <==> x>=y
__getattribute__(...)
x.__getattribute__('name') <==> x.name
__getitem__(...)
x.__getitem__(y) <==> x[y]
__gt__(...)
x.__gt__(y) <==> x>y
__init__(...)
x.__init__(...) initializes x; see help(type(x)) for signature
__iter__(...)
x.__iter__() <==> iter(x)
__le__(...)
x.__le__(y) <==> x<=y
__len__(...)
x.__len__() <==> len(x)
__lt__(...)
x.__lt__(y) <==> x<y
__ne__(...)
x.__ne__(y) <==> x!=y
__repr__(...)
x.__repr__() <==> repr(x)
__setitem__(...)
x.__setitem__(i, y) <==> x[i]=y
__sizeof__(...)
D.__sizeof__() -> size of D in memory, in bytes
clear(...)
D.clear() -> None.  Remove all items from D.
copy(...)
D.copy() -> a shallow copy of D
fromkeys(...)
dict.fromkeys(S[,v]) -> New dict with keys from S and values equal to v.
v defaults to None.
get(...)
D.get(k[,d]) -> D[k] if k in D, else d.  d defaults to None.
has_key(...)
D.has_key(k) -> True if D has a key k, else False
items(...)
D.items() -> list of D's (key, value) pairs, as 2-tuples
iteritems(...)
D.iteritems() -> an iterator over the (key, value) items of D
iterkeys(...)
D.iterkeys() -> an iterator over the keys of D
itervalues(...)
D.itervalues() -> an iterator over the values of D
keys(...)
D.keys() -> list of D's keys
pop(...)
D.pop(k[,d]) -> v, remove specified key and return the corresponding value.
If key is not found, d is returned if given, otherwise KeyError is raised
popitem(...)
D.popitem() -> (k, v), remove and return some (key, value) pair as a
2-tuple; but raise KeyError if D is empty.
setdefault(...)
D.setdefault(k[,d]) -> D.get(k,d), also set D[k]=d if k not in D
update(...)
D.update([E, ]**F) -> None.  Update D from dict/iterable E and F.
If E present and has a .keys() method, does:     for k in E: D[k] = E[k]
If E present and lacks .keys() method, does:     for (k, v) in E: D[k] = v
In either case, this is followed by: for k in F: D[k] = F[k]
values(...)
D.values() -> list of D's values
viewitems(...)
D.viewitems() -> a set-like object providing a view on D's items
viewkeys(...)
D.viewkeys() -> a set-like object providing a view on D's keys
viewvalues(...)
D.viewvalues() -> an object providing a view on D's values

Data and other attributes inherited from __builtin__.dict:
__hash__ = None
__new__ = <built-in method __new__ of type object>
T.__new__(S, ...) -> a new object with type S, a subtype of T

 
class group_args(__builtin__.object)
     Methods defined here:
__call__(self)
__init__(self, **keyword_arguments)
__repr__(self)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class mutable(slots_getstate_setstate)
    
Method resolution order:
mutable
slots_getstate_setstate
__builtin__.object

Methods defined here:
__init__(O, value)

Data descriptors defined here:
value

Methods inherited from slots_getstate_setstate:
__getstate__(self)
__setstate__(self, state)

 
class property(__builtin__.object)
    Syntactic sugar for defining class properties for those poor souls
who must stay compatible with older versions of Python which do not
feature the @property decorator.
 
Synopsis:
 
   class foo(object):
 
      class bar(libtbx.property):
         ''' documentation of the property
             In the following, self is the object featuring the property.
         '''
         def fget(self): # getter
         def fset(self, value): # setter
         def fdel(self): # deleter
 
  Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Data and other attributes defined here:
__metaclass__ = <class 'libtbx.__metaclass__'>

 
class slots_getstate_setstate(__builtin__.object)
     Methods defined here:
__getstate__(self)
__setstate__(self, state)

 
class slots_getstate_setstate_default_initializer(slots_getstate_setstate)
    
Method resolution order:
slots_getstate_setstate_default_initializer
slots_getstate_setstate
__builtin__.object

Methods defined here:
__init__(self, **kwds)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

Methods inherited from slots_getstate_setstate:
__getstate__(self)
__setstate__(self, state)

 
class unpicklable(__builtin__.object)
     Methods defined here:
__getinitargs__(O)
__getstate__(O)
__setstate__(O, state)
raise_error(O)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
adopt_init_args(obj, args, exclude=(), hide=False)
adopt_optional_init_args(obj, kwds)
Description:
  Easy management of long list of arguments with default value
  passed to __init__
Synopsis:
  class foo(object):
    z = 1
    def __init__(self, x, y, **kwds):
      self.x = x
      self.y = y
      adopt_optional_init_args(self, kwds)
 
  a = foo(x,y)
  assert a.z == 1
  a = foo(x,y, z=10)
  assert a.z == 10
only_element(sequence)

 
Data
        Auto = <libtbx.AutoType object>
call_back = <libtbx.callbacks.manager object>
division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)
env = <libtbx.env_config.environment instance>
manual_date_stamp = 20090819