Modules
		atexit bz2 glob gzip hashlib math os libtbx.pbs_utils re libtbx.sge_utils sys time traceback

Classes
		__builtin__.object detect_binary_file indentor buffered_indentor input_with_prompt multi_out null_out time_log timer_base user_plus_sys_time wall_clock_time Keep host_and_user import_python_object show_times   class Keep         class buffered_indentor(indentor)       Method resolution order: buffered_indentor indentor __builtin__.object Methods defined here: __init__(self, file_object=None, indent='', parent=None) write(self, block) write_buffer(self) Methods inherited from indentor: shift_right(self, indent=' ') Data descriptors inherited from indentor: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class detect_binary_file(__builtin__.object)       Methods defined here: __init__(self, monitor_initial=None, max_fraction_non_ascii=None) is_binary_file(self, block) Static methods defined here: from_initial_block(file_name, monitor_initial=None, max_fraction_non_ascii=None) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class host_and_user       Methods defined here: __init__(self) show(self, out=None, prefix='')   class import_python_object       Methods defined here: __init__(self, import_path, error_prefix, target_must_be, where_str)   class indentor(__builtin__.object)       Methods defined here: __init__(self, file_object=None, indent='', parent=None) shift_right(self, indent=' ') write(self, block) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class input_with_prompt(__builtin__.object)       Methods defined here: __del__(self) __init__(self, prompt, tracebacklimit=0) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class multi_out(__builtin__.object)       Methods defined here: __init__(self) close(self) flush(self) isatty(self) register(self, label, file_object, atexit_send_to=None) replace_stringio(self, old_label, new_label, new_file_object, new_atexit_send_to=None) write(self, str) writelines(self, sequence) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class null_out(__builtin__.object)       Methods defined here: close(self) flush(self) isatty(self) write(self, str) writelines(self, sequence) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class show_times       Methods defined here: __call__(self) __init__(self, time_start=None, out=None)   class time_log(__builtin__.object)       Methods defined here: __init__(self, label, use_wall_clock=False) average(self) log(self) log_elapsed(self, local_label) report(self) start(self) stop(self) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined) Data and other attributes defined here: legend = 'time_log: label: n accumulation delta average'   class timer_base(__builtin__.object)       Methods defined here: __init__(self) delta(self) elapsed(self) show_delta(self, prefix='', out=None) show_elapsed(self, prefix='', out=None) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class user_plus_sys_time(timer_base)       Method resolution order: user_plus_sys_time timer_base __builtin__.object Methods defined here: get(self) Methods inherited from timer_base: __init__(self) delta(self) elapsed(self) show_delta(self, prefix='', out=None) show_elapsed(self, prefix='', out=None) Data descriptors inherited from timer_base: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class wall_clock_time(timer_base)     motivation: when running multithreaded code, user_plus_sys_time would report the cumulated times for all threads: not very useful to analyse the scaling with the number of threads! Wall clock time, although it is less reliable is the only solution in that case     Method resolution order: wall_clock_time timer_base __builtin__.object Methods defined here: get(self) Methods inherited from timer_base: __init__(self) delta(self) elapsed(self) show_delta(self, prefix='', out=None) show_elapsed(self, prefix='', out=None) Data descriptors inherited from timer_base: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Functions
		bz2_open(file_name, mode) copy_file(source, target, compress=None) count_max(assert_less_than) date_and_time() escape_sh_double_quoted(s) the result is supposed to be double-quoted when passed to sh exercise() file_size(file_name) flat_list(nested_list) format_cpu_times(show_micro_seconds_per_tick=True) format_exception() get_memory_from_string(mem_str) getenv_bool(variable_name, default=False) gzip_open(file_name, mode) hashlib_md5 = openssl_md5(...) Returns a md5 hash object; optionally initialized with a string human_readable_time(time_in_seconds) human_readable_time_as_seconds(time_units, time_unit) if_none(value, default) n_dim_index_from_one_dim(i1d, sizes) number_from_string(string) numbers_as_str(values, fmt='%.6g', sep=', ', brackets=('[', ']')) plural_s(n, suffix='s') remove_files(pattern) search_for(pattern, mode, re_flags=0, lines=None, file_name=None) select_matching(key, choices, default=None) sequence_index_dict(seq, must_be_unique=True) show_exception_info_if_full_testing(prefix='EXCEPTION_INFO: ') show_times_at_exit(time_start=None, out=None) show_total_time(out=None, show_micro_seconds_per_bytecode_instruction=True) tupleize(x) warn_if_unexpected_md5_hexdigest(path, expected_md5_hexdigests, hints=[], out=None) write_this_is_auto_generated(f, file_name_generator) xlen(seq)

Data
		disable_tracebacklimit = False division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192) windows_device_names = ['CON', 'PRN', 'AUX', 'NUL', 'COM1', 'COM2', 'COM3', 'COM4', 'COM5', 'COM6', 'COM7', 'COM8', 'COM9', 'LPT1', 'LPT2', 'LPT3', 'LPT4', 'LPT5', 'LPT6', 'LPT7', ...]