- StringIO([s]) -- Return a StringIO-like stream for reading or writing
- adiabatic_mapping(pdb_hierarchy, restraints_manager, start_coords, end_coords, params, nsteps=10, verbose=False, out=None)
- Linear interpolation with energy minimization. The number of minimizer
cycles should be kept low to prevent each "frame" from snapping back to the
starting coordinates. Interpolating the dihedral restraint target angles
may help remediate this problem.
- fit_sites(sites_fixed, sites_moving, selection)
- Simple least-squares superposition of sites on reference structure
- homogenize_structures(pdb_hierarchies, delete_heteroatoms=False, delete_waters=True, debug=False, log=None)
- Eliminate atoms not present in all models. This ignores residue names, so
corresponding mainchain atoms should be preserved in most cases.
- morph_models(params, out=None, debug=False)
- run(args, out=None)