mmtbx.command_line.validation_summary
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/command_line/validation_summary.py

Convenience tool for collecting validation statistics with minimal overhead.

 
Modules
       
libtbx.easy_mp
iotbx.file_reader
mmtbx.validation.molprobity
os
libtbx.str_utils
sys

 
Classes
       
__builtin__.object
parallel_driver
libtbx.slots_getstate_setstate(__builtin__.object)
ensemble

 
class ensemble(libtbx.slots_getstate_setstate)
    MolProbity validation results for an ensemble of models.  Note that the
number of atoms in each model is not necessarily consistent.
 
 
Method resolution order:
ensemble
libtbx.slots_getstate_setstate
__builtin__.object

Methods defined here:
__init__(self, pdb_hierarchy, n_models, nproc=<libtbx.AutoType object>)
show(self, out=None, prefix='', show_percentiles=None)

Data descriptors defined here:
c_beta_deviations
clashscore
mpscore
rama_favored
rama_outliers
rotamer_outliers

Methods inherited from libtbx.slots_getstate_setstate:
__getstate__(self)
__setstate__(self, state)

 
class parallel_driver(__builtin__.object)
    Simple wrapper for passing to easy_mp.pool_map.
 
  Methods defined here:
__call__(self, i_model)
__init__(self, pdb_hierarchy)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
run(args, out=<open file '<stdout>', mode 'w'>)
summary(pdb_file=None, pdb_hierarchy=None)

 
Data
        Auto = <libtbx.AutoType object>
division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)