mmtbx.geometry_restraints
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/geometry_restraints/__init__.py

 
Package Contents
       
c_beta
external
flags
hbond
ramachandran
reference
rotamer
tst_c_beta_restraints
tst_hbond
tst_manager
tst_ramachandran
tst_reference_coordinate
tst_reference_coordinate2
tst_rotamer

 
Classes
       
__builtin__.object
manager

 
class manager(__builtin__.object)
     Methods defined here:
__init__(self, ramachandran_proxies=None, ramachandran_lookup=None, hydrogen_bond_proxies=None, hydrogen_bond_params=None, reference_manager=None, den_manager=None, ncs_manager=None, c_beta_dihedral_proxies=None, flags=None)
add_c_beta_torsion_restraints(self, pdb_hierarchy, selection=None, sigma=2.5)
get_hbonds_residual_sum(self, sites_cart, gradient_array=None)
get_n_c_beta_dihedral_proxies(self)
get_n_den_proxies(self)
get_n_hbonds(self)
get_n_proxies(self)
get_n_ramachandran_proxies(self)
get_n_reference_coordinate_proxies(self)
get_n_reference_torsion_proxies(self)
hbonds_as_simple_bonds(self)
remove_c_beta_torsion_restraints(self, selection)
remove_ramachandran_restraints(self)
restraints_residual_sum(self, sites_cart, gradient_array=None)
rotamers(self)
select(self, n_seq, iselection)
show_sorted_hbonds(self, by_value, sites_cart, site_labels=None, f=None, prefix='', max_items=None)
show_sorted_ramachandran(self, by_value, sites_cart, site_labels=None, f=None, prefix='', max_items=None)
update_hydrogen_bonds(self, pdb_hierarchy, xray_structure, params=None, log=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)