mmtbx.grow_density
index
/net/chevy/raid1/rwgk/dist/cctbx_project/mmtbx/grow_density.py

 
Modules
       
cctbx.adptbx
iotbx.crystal_symmetry_from_any
cctbx.array_family.flex
iotbx
math
mmtbx
os
iotbx.pdb
iotbx.reflection_file_reader
iotbx.reflection_file_utils
scitbx
sys
time
mmtbx.utils
cctbx.xray

 
Functions
       
StringIO(...)
StringIO([s]) -- Return a StringIO-like stream for reading or writing
cmd_run(args, command_name)
filter_da(params)
frange(start, end=None, inc=None)
A range function, that does accept float increments...
grow_density(f_obs, r_free_flags, xray_structure, params, center)
make_grid(center, radius, gap, occupancy, b_factor, atom_name, scattering_type, resname)
master_params()
pdb_atoms_as_xray_structure(pdb_atoms, crystal_symmetry)
refine_atoms(fmodel, number_of_iterations, number_of_cycles, selection)
reflection_file_server(crystal_symmetry, reflection_files)
run(processed_args, params)

 
Data
        Auto = <libtbx.AutoType object at 0x960390>
master_params_str = 'pdb_file_name = None\n .type = str\n .multiple =...loat\n .help = Max occupancy value to remove DA.\n'