Package Contents
		alignment bulk_solvent (package) chemical_components (package) command_line (package) dynamics (package) f_model find_peaks hydrogens (package) ias (package) invariant_domain maps masks max_lik (package) model model_statistics monomer_library (package) ncs (package) pdb_header pdbtools real_space (package) refinement (package) restraints rotamer (package) scaling (package) solvent (package) tls (package) tst_alignment tst_fmodel tst_fmodel_fd tst_model tst_pdbtools tst_utils tst_validate_utils twinning (package) utils wwpdb (package) xmanip xmanip_tasks

Classes
		__builtin__.object fmodels map_names   class fmodels(__builtin__.object)       Methods defined here: __init__(self, fmodel_xray=None, fmodel_neutron=None, xray_scattering_dict=None, neutron_scattering_dict=None, log=None) create_target_functors(self) fmodel_neutron(self, xray_structure=None) fmodel_xray(self, xray_structure=None) pseudo_deep_copy(self) remove_outliers(self) resolution_filter(self, d_min) show_comprihensive(self, message='') show_short(self) show_targets(self, log, text='') target_and_gradients(self, weights, compute_gradients, u_iso_refinable_params=None, occupancy=False) target_functor_result_neutron(self, compute_gradients) target_functor_result_xray(self, compute_gradients) update_bulk_solvent_and_scale(self, params=None, optimize_mask=False, force_update_f_mask=False) update_xray_structure(self, xray_structure=None, update_f_calc=None, update_f_mask=None, force_update_f_mask=False) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class map_names(__builtin__.object)       Methods defined here: __init__(self, map_name_string) error(self, s) format(self) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Data
		__warningregistry__ = {("Not importing directory '/net/chevy/raid1/rwgk/dist/cctbx': missing __init__.py", <type 'exceptions.ImportWarning'>, 3): 1, ("Not importing directory '/net/chevy/raid1/rwgk/dist/libtbx': missing __init__.py", <type 'exceptions.ImportWarning'>, 1): 1}