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- __builtin__.object
-
- atom
- bond_density
- extract_ias
- find_peak_at_bond
- ias
- ias_counters
- manager
class atom(__builtin__.object) |
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Methods defined here:
- __init__(self, site_cart=None, q=None, b_iso=None, name=None, i_seq=None, element=None)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class bond_density(__builtin__.object) |
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Methods defined here:
- __init__(self, data=None, dist=None, ideal_data=None, one_dim_point=None, one_dim_point_predicted=None, peak_data=None, peak_dist=None)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class extract_ias(__builtin__.object) |
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Methods defined here:
- __init__(self, xray_structure, bond_proxies_simple, pdb_atoms, planarity_proxies, log=None)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class find_peak_at_bond(__builtin__.object) |
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Methods defined here:
- __init__(self, map_data, unit_cell, label, site_cart_1, site_cart_2, step=0.0050000000000000001)
- find_peak(self, peak_width=0.29999999999999999, offset=0.10000000000000001)
- set_status(self)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class ias(__builtin__.object) |
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Methods defined here:
- __init__(self, atom_1=None, atom_2=None, atom_3=None, site_cart_predicted=None, peak_value=None, peak_position_cart=None, q=None, b_iso=None, name=None, type=None, bond_density=None, status=None)
- deep_copy(self)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class ias_counters(__builtin__.object) |
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Methods defined here:
- __init__(self, iass)
- show(self, out=None)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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class manager(__builtin__.object) |
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Methods defined here:
- __init__(self, geometry, pdb_atoms, xray_structure, params=None, fmodel=None, file_name=None, log=None)
- all_bonds(self, iass, file_name)
- iass_as_xray_structure(self, iass)
- write_pdb_file(self, out=None)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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