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- __builtin__.object
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- find_domain
class find_domain(__builtin__.object) |
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This class tries to find pseudo invariant domain given a set of sites.
It requires an empirical parameter named match_radius to be set to a sensible
value. For large movements, having this value set to 2.5 is probably okai.
If the movements are more subtle, more problem dedicated software might be
the best course of action.
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Methods defined here:
- __init__(self, set_a, set_b, initial_rms=0.5, match_radius=2.0, overlap_thres=0.75, minimum_size=25)
- find_largest(self, matches, used_flags=None)
- find_similar_matches(self, target, matches, used, overlap_thres)
- pair_sites(self, r, t, cut_off)
- process(self, matches, overlap_thres=0.75, minimum_size=10)
- show(self, out=None)
- zipper(self, initial_rms, level)
Data descriptors defined here:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
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