mmtbx.invariant_domain
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/invariant_domain.py

 
Modules
       
cctbx.array_family.flex
scitbx.math.superpose
sys

 
Classes
       
__builtin__.object
find_domain

 
class find_domain(__builtin__.object)
    This class tries to find pseudo invariant domain given a set of sites.
It requires an empirical parameter named match_radius to be set to a sensible
value. For large movements, having this value set to 2.5 is probably okai.
If the movements are more subtle, more problem dedicated software might be
the best course of action.
 
  Methods defined here:
__init__(self, set_a, set_b, initial_rms=0.5, match_radius=2.0, overlap_thres=0.75, minimum_size=25)
find_largest(self, matches, used_flags=None)
find_similar_matches(self, target, matches, used, overlap_thres)
pair_sites(self, r, t, cut_off)
process(self, matches, overlap_thres=0.75, minimum_size=10)
show(self, out=None)
zipper(self, initial_rms, level)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
exercise()
exercise_core(n=10, verbose=0)

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)