mmtbx.map_tools
index
/net/chevy/raid1/rwgk/dist/cctbx_project/mmtbx/map_tools.py

 
Modules
       
cctbx.adptbx
boost
mmtbx.bulk_solvent.bulk_solvent_and_scaling
cctbx
cctbx.crystal
iotbx.crystal_symmetry_from_any
iotbx.pdb.crystal_symmetry_from_pdb
scitbx.python_utils.easy_pickle
cctbx.eltbx
mmtbx_f_model_ext
scitbx.fftpack
cctbx.array_family.flex
iotbx
libtbx
cctbx.maptbx
mmtbx.masks
math
scitbx.matrix
mmtbx.max_lik
mmtbx.max_lik.maxlik
cctbx.miller
mmtbx
mmtbx.monomer_library
iotbx.mtz
os
iotbx.pdb
mmtbx.refinement.print_statistics
random
iotbx.reflection_file_reader
iotbx.reflection_file_utils
cctbx.sgtbx
sys
cctbx.uctbx
cctbx.xray
iotbx.pdb.xray_structure

 
Classes
       
__builtin__.object
electron_density_map
kick_map
model_to_map

 
class electron_density_map(__builtin__.object)
     Methods defined here:
__init__(self, fmodel, fill_missing_f_obs=False, filled_f_obs_file_name=None, fill_mode=None, reverse_scale=True)
fft_map(self, resolution_factor=0.33333333333333331, symmetry_flags=None, map_coefficients=None, other_fft_map=None, map_type=None, alpha_fom_source=None, force_anomalous_flag_false=None, use_all_data=True)
map_coefficients(self, map_type, alpha_fom_source=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class kick_map(__builtin__.object)
     Methods defined here:
__init__(self, fmodel, map_type, number_of_kicks=50, update_bulk_solvent_and_scale=False, resolution_factor=0.25, symmetry_flags=None, other_fft_map=None, real_map_unpadded=True, real_map=False, average_maps=False)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class model_to_map(__builtin__.object)
     Methods defined here:
__init__(self, fmodel_tmp, xray_structure, fmodel, map_type, update_bulk_solvent_and_scale, resolution_factor, other_fft_map, symmetry_flags, bss_params, alpha_fom_source)
fft_map(self)
map_coefficients(self)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
StringIO(...)
StringIO([s]) -- Return a StringIO-like stream for reading or writing