mmtbx.maps
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/maps/__init__.py

 
Package Contents
       
composite_omit_map
fem
fobs_minus_fobs_map
kick
superpose
tst_composite_omit_map
tst_composite_omit_map_2
tst_composite_omit_map_3
tst_utils
utils

 
Classes
       
__builtin__.object
compute_map_coefficients
write_xplor_map_file
map_coeffs_mtz_label_manager

 
class compute_map_coefficients(__builtin__.object)
     Methods defined here:
__init__(self, fmodel, params, mtz_dataset=None, post_processing_callback=None, pdb_hierarchy=None, log=<open file '<stdout>', mode 'w'>)
write_mtz_file(self, file_name, mtz_history_buffer=None, r_free_flags=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class map_coeffs_mtz_label_manager
     Methods defined here:
__init__(self, map_params)
amplitudes(self)
phases(self, root_label, anomalous_sign=None)

 
class write_xplor_map_file(__builtin__.object)
     Methods defined here:
__init__(self, params, coeffs, atom_selection_manager=None, xray_structure=None)
atom_iselection(self)
box_around_selection(self, iselection, buffer)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
b_factor_sharpening_by_map_kurtosis_maximization(map_coeffs, show=True, b_sharp_best=None, b_only=False)
cast_map_coeff_params(map_type_obj)
compute_f_calc(fmodel, params)
compute_xplor_maps(fmodel, params, atom_selection_manager=None, file_name_prefix=None, file_name_base=None, post_processing_callback=None, pdb_hierarchy=None)
map_and_map_coeff_master_params()
map_coefficients_from_fmodel(params, fmodel=None, map_calculation_server=None, post_processing_callback=None, pdb_hierarchy=None)
maps_including_IO_master_params()

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)
map_and_map_coeff_params_ncs_str = ' map_coefficients\n .multiple = True\n .sho...ot present.\n .short_caption = NCS average\n\n }\n\n'
map_and_map_coeff_params_str = ' map_coefficients\n .multiple = True\n .sho... isotropize = True\n .type = bool\n \n }\n\n'
map_coeff_params_base_str = ' map_coefficients\n .multiple = True\n .sho... .type = choice(multi=False)\n }\n %s\n }\n'
map_coeff_params_ncs_str = ' map_coefficients\n .multiple = True\n .sho...not present.\n .short_caption = NCS average\n\n }\n'
map_coeff_params_str = ' map_coefficients\n .multiple = True\n .sho... .type = choice(multi=False)\n }\n \n }\n'
map_params_base_str = ' map\n .short_caption = XPLOR or CCP4 map\n ... isotropize = True\n .type = bool\n %s\n }\n'
map_params_ncs_str = ' map\n .short_caption = XPLOR or CCP4 map\n ...not present.\n .short_caption = NCS average\n\n }\n'
map_params_str = ' map\n .short_caption = XPLOR or CCP4 map\n ... isotropize = True\n .type = bool\n \n }\n'
maps_including_IO_params_str = 'maps {\n input {\n pdb_file_name = None\n ...isotropize = True\n .type = bool\n \n }\n\n}\n'
master_params = 'maps {\n input {\n pdb_file_name = None\n ...isotropize = True\n .type = bool\n \n }\n\n}\n'
ncs_average_param_str = '\nncs_average = False\n .type = bool\n .expert_le...S is not present.\n .short_caption = NCS average\n'