mmtbx.masks
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/masks/__init__.py

 
Package Contents
       
tst_asu_mask
tst_masks

 
Classes
       
__builtin__.object
asu_mask
manager
mask_from_xray_structure
cctbx_masks_ext.around_atoms(Boost.Python.instance)
bulk_solvent

 
class asu_mask(__builtin__.object)
     Methods defined here:
__init__(self, xray_structure, d_min=None, n_real=None, mask_params=None)
mask_data_whole_uc(self)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class bulk_solvent(cctbx_masks_ext.around_atoms)
    
Method resolution order:
bulk_solvent
cctbx_masks_ext.around_atoms
Boost.Python.instance
__builtin__.object

Methods defined here:
__init__(self, xray_structure, ignore_zero_occupancy_atoms, solvent_radius, shrink_truncation_radius, ignore_hydrogen_atoms=True, gridding_n_real=None, grid_step=None, atom_radii=None)
mask_as_xplor_map(self, file_name)
show_summary(self, out=None)
structure_factors(self, miller_set)
subtract_non_uniform_solvent_region_in_place(self, non_uniform_mask)

Methods inherited from cctbx_masks_ext.around_atoms:
__reduce__ = (...)

Data descriptors inherited from cctbx_masks_ext.around_atoms:
accessible_surface_fraction
contact_surface_fraction
data
n_atom_points
shrink_truncation_radius
solvent_radius

Data descriptors inherited from Boost.Python.instance:
__dict__
__weakref__

Data and other attributes inherited from Boost.Python.instance:
__new__ = <built-in method __new__ of Boost.Python.class object>
T.__new__(S, ...) -> a new object with type S, a subtype of T

 
class manager(__builtin__.object)
     Methods defined here:
__init__(self, miller_array, xray_structure=None, miller_array_twin=None, mask_params=None, compute_mask=True)
bulk_solvent_mask(self)
compute_f_mask(self)
deep_copy(self)
select(self, selection)
shell_f_masks(self, xray_structure=None, force_update=False)
shell_f_masks_twin(self)
# TODO: this seems to be unused

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
class mask_from_xray_structure(__builtin__.object)
     Methods defined here:
__init__(self, xray_structure, p1, solvent_radius, shrink_truncation_radius, for_structure_factors, n_real)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
generate_groups(...)
generate_groups( (str)arg1, (int)arg2) -> std_string :
 
    C++ signature :
        scitbx::af::shared<std::string> generate_groups(std::string,int)

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)
mask_master_params = <libtbx.phil.scope object>
number_of_mask_calculations = 0