mmtbx.masks
index
/net/chevy/raid1/rwgk/dist/cctbx_project/mmtbx/masks.py

 
Modules
       
boost
mmtbx_masks_ext
scitbx.fftpack
cctbx.array_family.flex
libtbx.introspection
iotbx
cctbx.maptbx
mmtbx.masks
scitbx.matrix
sys
cctbx.eltbx.van_der_waals_radii

 
Classes
       
__builtin__.object
manager
mmtbx_masks_ext.around_atoms(Boost.Python.instance)
bulk_solvent

 
class bulk_solvent(mmtbx_masks_ext.around_atoms)
    
Method resolution order:
bulk_solvent
mmtbx_masks_ext.around_atoms
Boost.Python.instance
__builtin__.object

Methods defined here:
__init__(self, xray_structure, ignore_zero_occupancy_atoms, solvent_radius, shrink_truncation_radius, ignore_hydrogen_atoms=True, gridding_n_real=None, grid_step=None)
mask_as_xplor_map(self, file_name)
show_summary(self, out=None)
structure_factors(self, miller_set)
subtract_non_uniform_solvent_region_in_place(self, non_uniform_mask)

Methods inherited from mmtbx_masks_ext.around_atoms:
__reduce__ = (...)

Data descriptors inherited from mmtbx_masks_ext.around_atoms:
accessible_surface_fraction
contact_surface_fraction
data
n_atom_points
shrink_truncation_radius
solvent_radius

Data descriptors inherited from Boost.Python.instance:
__dict__
__weakref__

Data and other attributes inherited from Boost.Python.instance:
__new__ = <built-in method __new__ of Boost.Python.class object at 0x2aaaac44c8c0>
T.__new__(S, ...) -> a new object with type S, a subtype of T

 
class manager(__builtin__.object)
     Methods defined here:
__init__(self, miller_array, xray_structure, miller_array_twin=None, mask_params=None)
bulk_solvent_mask(self)
compute_f_mask(self, twin=False)
deep_copy(self)
f_mask(self, xray_structure_new=None, force_update=False, twin=False)
select(self, selection)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
generate_groups(...)
generate_groups( (str)arg1, (int)arg2) -> std_string :
 
    C++ signature :
        scitbx::af::shared<std::string> generate_groups(std::string,int)
vdw_radii_from_xray_structure(xray_structure)

 
Data
        mask_master_params = <libtbx.phil.scope object at 0x2519f28>
number_of_mask_calculations = 0