mmtbx.model_vs_data
index
/net/chevy/raid1/nat/src/cctbx_project/mmtbx/model_vs_data.py

 
Modules
       
cctbx.adptbx
libtbx.easy_pickle
cctbx.array_family.flex
iotbx
mmtbx
mmtbx.model_statistics
os
iotbx.pdb
random
re
mmtbx.real_space_correlation
iotbx.reflection_file_utils
cctbx.sgtbx
sys
mmtbx.utils

 
Classes
       
__builtin__.object
mvd

 
class mvd(__builtin__.object)
     Methods defined here:
__init__(self)
collect(self, crystal=None, models=None, data=None, model_vs_data=None, pdb_header=None, misc=None, maps=None)
get_summary(self)
show(self, log=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
StringIO(...)
StringIO([s]) -- Return a StringIO-like stream for reading or writing
defaults(log, silent)
maps(fmodel, mvd_obj, map_cutoff=3.0, map_type='mFo-DFc')
molprobity_stats(model_statistics_geometry, resname_classes)
reflection_file_server(crystal_symmetry, reflection_files)
run(args, command_name='mmtbx.model_vs_data', show_geometry_statistics=True, model_size_max_atoms=80000, data_size_max_reflections=1000000, unit_cell_max_dimension=800.0, return_fmodel_and_pdb=False, out=None, log=<open file '<stdout>', mode 'w'>)
show_data(fmodel, n_outl, test_flag_value, f_obs_labels, fmodel_cut)
show_geometry(xray_structures, processed_pdb_file, scattering_table, hierarchy, model_selections, show_geometry_statistics, mvd_obj, atom_selections)
show_model_vs_data(fmodel)
show_xray_structure_statistics(xray_structure, atom_selections, hd_sel=None)
summarize_results(mvd_obj)
# XXX this is really, really gross.

 
Data
        division = _Feature((2, 2, 0, 'alpha', 2), (3, 0, 0, 'alpha', 0), 8192)
master_params_str = 'f_obs_label = None\n .type = str\nr_free_flags_la...s = None\n .type = str\nn_bins = 20\n .type = int\n'
msg = '\nphenix.model_vs_data: compute model, data and m...o-DFc,\n 3.2Fo-2.3Fc, Fc, anom, fo-fc_kick, etc.\n'