mmtbx.model_vs_data
index
/net/chevy/raid1/rwgk/dist/cctbx_project/mmtbx/model_vs_data.py

 
Modules
       
cctbx.adptbx
mmtbx.bulk_solvent.bulk_solvent_and_scaling
iotbx.crystal_symmetry_from_any
iotbx.pdb.crystal_symmetry_from_pdb
libtbx.easy_run
iotbx.pdb.extract_rfactors_resolutions_sigma
cctbx.array_family.flex
iotbx
mmtbx.maps
mmtbx.masks
mmtbx
mmtbx.model_statistics
mmtbx.monomer_library
os
iotbx.pdb
random
iotbx.reflection_file_reader
iotbx.reflection_file_utils
sys
time
mmtbx.utils

 
Classes
       
__builtin__.object
mvd

 
class mvd(__builtin__.object)
     Methods defined here:
__init__(self)
collect(self, crystal=None, models=None, data=None, model_vs_data=None, pdb_header=None, misc=None)
show(self, log=None)

Data descriptors defined here:
__dict__
dictionary for instance variables (if defined)
__weakref__
list of weak references to the object (if defined)

 
Functions
       
StringIO(...)
StringIO([s]) -- Return a StringIO-like stream for reading or writing
get_matthews_coeff(file_lines)
get_program_name(file_lines)
get_solvent_content(file_lines)
read_mvd_output(file_lines, name)
reflection_file_server(crystal_symmetry, reflection_files)
run(args, command_name='mmtbx.model_vs_data', show_geometry_statistics=True, model_size_max_atoms=80000, data_size_max_reflections=1000000, unit_cell_max_dimension=800.0, return_fmodel_and_pdb=False)
show_data(fmodel, n_outl, test_flag_value, f_obs_labels, fmodel_cut)
show_geometry(processed_pdb_file, scattering_table, pdb_inp, model_selections, show_geometry_statistics, mvd_obj)
show_model_vs_data(fmodel)
show_xray_structure_statistics(xray_structure, hd_sel=None)