Modules
		cctbx.geometry_restraints libtbx scitbx.matrix scitbx

Classes
		__builtin__.object evaluate   class evaluate(__builtin__.object)       Methods defined here: __init__(self, params, sites_cart_1, sites_cart_2) Static methods defined here: given_atoms(params, atoms_1, atoms_2) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Functions
		extract_required_atoms(resname, atoms, atom_names=None)

Data
		c1p_n_name = {'A': ' N9 ', 'C': ' N1 ', 'G': ' N9 ', 'U': ' N1 '} master_phil = <libtbx.phil.scope object at 0x1ed5c80> required_atom_indices = {'A': {"C1'": 1, "C3'": 4, "C4'": 5, "C5'": 6, 'N9': 7, "O2'": 2, "O3'": 3, 'P': 0}, 'C': {"C1'": 1, "C3'": 4, "C4'": 5, "C5'": 6, 'N1': 7, "O2'": 2, "O3'": 3, 'P': 0}, 'G': {"C1'": 1, "C3'": 4, "C4'": 5, "C5'": 6, 'N9': 7, "O2'": 2, "O3'": 3, 'P': 0}, 'U': {"C1'": 1, "C3'": 4, "C4'": 5, "C5'": 6, 'N1': 7, "O2'": 2, "O3'": 3, 'P': 0}}