Modules
		cctbx.adptbx mmtbx.bulk_solvent.bulk_solvent_and_scaling cctbx.crystal iotbx.crystal_symmetry_from_any iotbx.pdb.crystal_symmetry_from_pdb cctbx_xray_ext cctbx.array_family.flex iotbx mmtbx.map_tools cctbx.maptbx math cctbx.miller mmtbx os iotbx.reflection_file_reader iotbx.reflection_file_utils scitbx.array_family.shared sys time

Classes
		__builtin__.object map_cc_funct model_to_map pdb_to_xrs   class map_cc_funct(__builtin__.object)       Methods defined here: __init__(self, map_1, xray_structure, fft_map, atom_radius, atom_detail, residue_detail, selection=None, pdb_hierarchy=None) extract_residues(self, combine=True) map_cc(self, map_2, ignore_points_with_map_values_less_than, set_cc_to_zero_if_n_grid_points_less_than, poor_cc_threshold, poor_map_value_threshold) overall_correlation_min_max_standard_deviation(self, log=None) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class model_to_map(__builtin__.object)       Methods defined here: __init__(self, xray_structure, f_obs, map_type, resolution_factor, high_resolution, low_resolution, use_kick_map, other_fft_map=None) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class pdb_to_xrs(__builtin__.object)       Methods defined here: __init__(self, pdb_files, crystal_symmetry, scattering_table) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Functions
		StringIO(...) StringIO([s]) -- Return a StringIO-like stream for reading or writing cmd_run(args, command_name) compute_grid_step_from_atom_radius_and_number_of_grid_points(r, n, d_min, resolution_factor=0.33333333333333331) compute_map_from_model(high_resolution, low_resolution, xray_structure, grid_resolution_factor, crystal_gridding=None) extract_crystal_symmetry(params) extract_data_and_flags(params, crystal_symmetry) master_params() run(params, d_min_default=1.5, d_max_default=999.89999999999998) set_details_level_and_radius(details_level, d_min, atom_radius) show_result(result, show_hydrogens=False, log=None) simple(fmodel, pdb_hierarchy=None, map_1_name='Fc', map_2_name='2mFo-DFc', details_level='automatic', atom_radius=None, number_of_grid_points=100, show=True, log=None, show_hydrogens=False, selection=None, ignore_points_with_map_values_less_than=0.29999999999999999, set_cc_to_zero_if_n_grid_points_less_than=50, poor_cc_threshold=0.69999999999999996, poor_map_value_threshold=1.0)

Data
		Auto = <libtbx.AutoType object at 0x960390> core_params_str = 'atom_radius = None\n .type = float\n .help = Ato..._cell\n space_group=None\n .type=space_group\n}\n' master_params_str = 'atom_radius = None\n .type = float\n .help = Ato...= False\n .type = bool\n .expert_level = 2\n}\n'