| | |
- unittest.TestCase(__builtin__.object)
-
- test_alignment
- test_alignment_parse
- test_clustal_alignment
- test_fasta_alignment
- test_fasta_sequence
- test_midline
- test_pir_alignment
- test_pir_sequence
- test_sequence
- test_sequence_parse
class test_alignment(unittest.TestCase) |
| | |
- Method resolution order:
- test_alignment
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testError(self)
- testIdentityCount(self)
- testIdentityFraction(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
|
class test_alignment_parse(unittest.TestCase) |
| | |
- Method resolution order:
- test_alignment_parse
- unittest.TestCase
- __builtin__.object
Methods defined here:
- testAli(self)
- testClustal(self)
- testFasta(self)
- testPir(self)
- test_filename_selection(self)
- test_known_formats(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- setUp(self)
- Hook method for setting up the test fixture before exercising it.
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
|
class test_clustal_alignment(unittest.TestCase) |
| | |
- Method resolution order:
- test_clustal_alignment
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testFormat(self)
- testStr(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
|
class test_fasta_alignment(unittest.TestCase) |
| | |
- Method resolution order:
- test_fasta_alignment
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testError(self)
- testFormat(self)
- testStr(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
|
class test_fasta_sequence(unittest.TestCase) |
| | |
- Method resolution order:
- test_fasta_sequence
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testFormat(self)
- testStr(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
|
class test_midline(unittest.TestCase) |
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- Method resolution order:
- test_midline
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testConservationCode(self)
- testMidline(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
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class test_pir_alignment(unittest.TestCase) |
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- Method resolution order:
- test_pir_alignment
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testError(self)
- testFormat(self)
- testStr(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
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class test_pir_sequence(unittest.TestCase) |
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- Method resolution order:
- test_pir_sequence
- unittest.TestCase
- __builtin__.object
Methods defined here:
- setUp(self)
- testFormat(self)
- testStr(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
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class test_sequence(unittest.TestCase) |
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- Method resolution order:
- test_sequence
- unittest.TestCase
- __builtin__.object
Methods defined here:
- testEquality(self)
- testNonEquality(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- setUp(self)
- Hook method for setting up the test fixture before exercising it.
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
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class test_sequence_parse(unittest.TestCase) |
| | |
- Method resolution order:
- test_sequence_parse
- unittest.TestCase
- __builtin__.object
Methods defined here:
- testFasta(self)
- testPir(self)
- testSequence(self)
- test_filename_selection(self)
- test_known_formats(self)
Methods inherited from unittest.TestCase:
- __call__(self, *args, **kwds)
- __eq__(self, other)
- __hash__(self)
- __init__(self, methodName='runTest')
- Create an instance of the class that will use the named test
method when executed. Raises a ValueError if the instance does
not have a method with the specified name.
- __ne__(self, other)
- __repr__(self)
- __str__(self)
- assertAlmostEqual = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertAlmostEquals = failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertEqual = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertEquals = failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- assertFalse = failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- assertNotAlmostEqual = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotAlmostEquals = failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- assertNotEqual = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertNotEquals = failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- assertRaises = failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- assertTrue = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- assert_ = failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- countTestCases(self)
- debug(self)
- Run the test without collecting errors in a TestResult
- defaultTestResult(self)
- fail(self, msg=None)
- Fail immediately, with the given message.
- failIf(self, expr, msg=None)
- Fail the test if the expression is true.
- failIfAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are equal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failIfEqual(self, first, second, msg=None)
- Fail if the two objects are equal as determined by the '=='
operator.
- failUnless(self, expr, msg=None)
- Fail the test unless the expression is true.
- failUnlessAlmostEqual(self, first, second, places=7, msg=None)
- Fail if the two objects are unequal as determined by their
difference rounded to the given number of decimal places
(default 7) and comparing to zero.
Note that decimal places (from zero) are usually not the same
as significant digits (measured from the most signficant digit).
- failUnlessEqual(self, first, second, msg=None)
- Fail if the two objects are unequal as determined by the '=='
operator.
- failUnlessRaises(self, excClass, callableObj, *args, **kwargs)
- Fail unless an exception of class excClass is thrown
by callableObj when invoked with arguments args and keyword
arguments kwargs. If a different type of exception is
thrown, it will not be caught, and the test case will be
deemed to have suffered an error, exactly as for an
unexpected exception.
- id(self)
- run(self, result=None)
- setUp(self)
- Hook method for setting up the test fixture before exercising it.
- shortDescription(self)
- Returns a one-line description of the test, or None if no
description has been provided.
The default implementation of this method returns the first line of
the specified test method's docstring.
- tearDown(self)
- Hook method for deconstructing the test fixture after testing it.
Data descriptors inherited from unittest.TestCase:
- __dict__
- dictionary for instance variables (if defined)
- __weakref__
- list of weak references to the object (if defined)
Data and other attributes inherited from unittest.TestCase:
- failureException = <type 'exceptions.AssertionError'>
- Assertion failed.
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