Modules
		cctbx.adptbx libtbx.easy_run scitbx.array_family.flex iotbx libtbx math mmtbx mmtbx.monomer_library os iotbx.reflection_file_reader sys time mmtbx.utils

Classes
		__builtin__.object xray_structure_plus   class xray_structure_plus(__builtin__.object)       Methods defined here: __init__(self, file_name) selection(self, selection_strings) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)

Functions
		check_adp_rand(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_adp_set_b_iso(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_adp_to_aniso(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_adp_to_iso(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_all_none(cmd, xrsp_init, output, verbose, tolerance=0.001) check_keep_remove_conflict(cmd, output, verbose) check_keep_selection(cmd, xrsp_init, output, selection, selection_str, keep_selection_str, verbose, tolerance=0.001) check_occ_randomize(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_occ_set(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_remove_selection(cmd, xrsp_init, output, selection, selection_str, remove_selection_str, verbose, tolerance=0.001) check_sites_rt(cmd, xrsp_init, output, selection, selection_str, verbose, tolerance=0.001) check_sites_shake(cmd, xrsp_init, output, selection, selection_str, shake, verbose, tolerance=0.001) exercise(args) exercise_01(pdb_dir, verbose) exercise_02(pdb_dir, verbose) exercise_basic(pdb_dir, verbose) exercise_f_model_option_custom(pdb_dir, verbose) exercise_f_model_option_default(pdb_dir, verbose) exercise_multiple(pdb_dir, verbose) exercise_no_cryst1(pdb_dir, verbose) exercise_show_adp_statistics(pdb_dir, verbose) exercise_show_geometry_statistics(pdb_dir, verbose) exercise_show_number_of_removed(pdb_dir, verbose) test_quiet(file_name, verbose)