Modules
		cctbx.adptbx cctbx.crystal iotbx.crystal_symmetry_from_any cctbx.array_family.flex iotbx libtbx scitbx.matrix os iotbx.reflection_file_reader iotbx.reflection_file_utils cctbx.sgtbx sys mmtbx.xmanip_tasks

Functions
		StringIO(...) StringIO([s]) -- Return a StringIO-like stream for reading or writing chain_name_modifier(chain_id, increment) construct_output_labels(labels, label_appendix, out=None) print_help(command_name) read_data(file_name, labels, xs, log=None) run(args, command_name='phenix.xmanip') write_as_pdb_file(input_xray_structure=None, input_crystal_symmetry=None, input_pdb=None, out=None, chain_id_increment=5, additional_remark=None, print_cryst_and_scale=True)

Data
		master_params = <libtbx.phil.scope object at 0x295a870>