Modules
		cctbx.adptbx cctbx.crystal iotbx.crystal_symmetry_from_any cctbx.array_family.flex iotbx libtbx scitbx.matrix os iotbx.reflection_file_reader iotbx.reflection_file_utils cctbx.sgtbx sys mmtbx.xmanip_tasks

Classes
		__builtin__.object quick_rt_mx   class quick_rt_mx(__builtin__.object)       Methods defined here: __init__(self, r=[1, 0, 0, 0, 1, 0, 0, 0, 1], t=(0, 0, 0)) inverse(self) r(self) show(self, out=None) t(self) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined) Data and other attributes defined here: matrix = <module 'scitbx.matrix' from '/net/chevy/raid1/rwgk/dist/cctbx_project/scitbx/matrix.pyc'>

Functions
		StringIO(...) StringIO([s]) -- Return a StringIO-like stream for reading or writing chain_name_modifier(chain_id, increment) construct_output_labels(labels, label_appendix, out=None) print_help(command_name) read_data(file_name, labels, xs, log=None) run(args, command_name='phenix.xmanip') write_as_pdb_file(input_xray_structure=None, input_crystal_symmetry=None, input_pdb=None, out=None, chain_id_increment=5, additional_remark=None, print_cryst_and_scale=True)

Data
		master_params = <libtbx.phil.scope object at 0x35cb370>