chain Class Reference

Chain attributes. More...

#include <hierarchy.h>

List of all members.

Public Member Functions
	chain (model const &parent, const char *id="")
	chain (const char *id="")
	chain (const chain_data *other)
	chain (model const &parent, chain const &other)
chain	detached_copy () const
std::size_t	memory_id () const
shared_ptr< model_data >	parent_ptr () const
boost::optional< model >	parent () const
unsigned	residue_groups_size () const
std::vector< residue_group > const &	residue_groups () const
std::vector< residue_group > ::iterator	residue_groups_begin () const
long	find_residue_group_index (hierarchy::residue_group const &residue_group, bool must_be_present=false) const
void	pre_allocate_residue_groups (unsigned number_of_additional_residue_groups)
void	insert_residue_group (long i, hierarchy::residue_group &residue_group)
void	append_residue_group (hierarchy::residue_group &residue_group)
void	remove_residue_group (long i)
void	remove_residue_group (hierarchy::residue_group &residue_group)
unsigned	atoms_size () const
af::shared< atom >	atoms_sequential_conf () const
	Not available in Python.
void	merge_residue_groups (residue_group &primary, residue_group &secondary)
af::shared< std::size_t >	merge_disconnected_residue_groups_with_pure_altloc ()
af::shared< af::tiny < std::size_t, 2 > >	find_pure_altloc_ranges (const char *common_residue_name_class_only=0) const
bool	is_identical_hierarchy (chain const &other) const
bool	is_similar_hierarchy (chain const &other) const
af::shared< conformer >	conformers () const
af::shared< atom >	atoms_interleaved_conf (bool group_residue_names=true) const
	Not available in Python.
af::shared< atom >	atoms (int interleaved_conf=0) const
Public Attributes
shared_ptr< chain_data >	data
Friends
class	residue_group
class	conformer
class	model

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Detailed Description

Chain attributes.

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The documentation for this class was generated from the following file:

• iotbx/pdb/hierarchy.h