Package Contents
		alignment bioinformatics bulk_solvent (package) chemical_components (package) command_line (package) dynamics (package) f_model find_peaks grow_density hydrogens (package) ias (package) invariant_domain map_tools maps (package) masks max_lik (package) model model_statistics model_vs_data monomer_library (package) ncs (package) pdbtools polygon (package) real_space (package) real_space_correlation refinement (package) restraints rotamer (package) rsr (package) run_tests scaling (package) solvent (package) tls (package) tst_alignment tst_bioinformatics tst_fmodel tst_fmodel_fd tst_map_type_parser tst_model tst_pdbtools tst_utils twinning (package) utils wwpdb (package) xmanip xmanip_tasks

Classes
		__builtin__.object fmodels map_names   class fmodels(__builtin__.object)       Methods defined here: __init__(self, fmodel_xray=None, fmodel_neutron=None, xray_scattering_dict=None, neutron_scattering_dict=None, neutron_refinement=None, twin_law=None, log=None) create_target_functors(self) fmodel_neutron(self, xray_structure=None) fmodel_xray(self, xray_structure=None) prepare_target_functors_for_minimization(self) pseudo_deep_copy(self) remove_outliers(self) resolution_filter(self, d_min) show_comprehensive(self, message='') show_short(self) show_targets(self, log, text='') target_and_gradients(self, weights, compute_gradients, u_iso_refinable_params=None, occupancy=False) target_functor_result_neutron(self, compute_gradients) target_functor_result_xray(self, compute_gradients) update_bulk_solvent_and_scale(self, params=None, optimize_mask=False, force_update_f_mask=False) update_xray_structure(self, xray_structure=None, update_f_calc=None, update_f_mask=None, force_update_f_mask=False) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined)   class map_names(__builtin__.object)       Methods defined here: __init__(self, map_name_string) error(self, s) format(self) Data descriptors defined here: __dict__ dictionary for instance variables (if defined) __weakref__ list of weak references to the object (if defined) Data and other attributes defined here: DFC = ['dfcalc', 'dfcal', 'dfc', 'dfmodel', 'dfmod', 'dfm'] FC = ['fcalc', 'fcal', 'fc', 'fmodel', 'fmod', 'fm'] FILLED = ['+filled', '-filled', 'filled', '+fill', '-fill', 'fill'] FO = ['fobs', 'fob', 'fo'] KICK = ['-kicked', '+kicked', 'kicked', '-kick', '+kick', 'kick'] MFO = ['mfobs', 'mfob', 'mfo']